Developing a tool for noninvasive monitoring of renal allografts

Renal transplantation has emerged as the therapy of choice for many patients with end-stage renal disease. One of the major goals is to tailor immunosuppressive therapy to the individual needs of every patient at every time point post transplant, balancing the risk for rejection and over-immunosuppression. Such individualized treatment will require assays that can detect harmful processes in the allograft early and that can be measured repeatedly. In this review, advantages and disadvantages of current assays to monitor renal allografts noninvasively and how proteomic technology might contribute to the development of novel biomarkers to improve patient management will be discussed.     

Penetration of soil aggregates of finite size

Summary Maximum penetrometer pressure was measured on artificial soil aggregates of finite size (2–29 mm) using blunt probes (total cone angle 60°) driven at 3 mm min⁻¹. Maximum penetrometer pressure increased asymptotically with increase in dimensionless aggregate radius,b/a, wherea andb are the probe and aggregate radii, respectively. A theory was developed for penetration of blunt probes into soil aggregates of finite size. The theory assumed that plastic failure occurs out to a radius,R, and that beyond this only elastic straining occurs. This theory can be applied to estimate the radial and tangential stresses adjacent to a blunt probe. The estimated radial and tangential stresses increased with increase in dimensionless aggregate radius,b/a. The radius of the plastic front,R, around the probe is predicted to increase with increased aggregate size. The results also demonstrate the effect of soil shear cohesion and internal friction angle onR. The results are discussed with reference to root penetration.     

An Optimized Proteomics Approach Reveals Novel Alternative Proteins in Mouse Liver Development

Alternative ORFs (AltORFs) are unannotated sequences in genome that encode novel peptides or proteins named alternative proteins (AltProts). Although ribosome profiling and bioinformatics predict a large number of AltProts, mass spectrometry as the only direct way of identification is hampered by the short lengths and relative low abundance of AltProts. There is an urgent need for improvement of mass spectrometry methodologies for AltProt identification. Here, we report an approach based on size-exclusion chromatography for simultaneous enrichment and fractionation of AltProts from complex proteome. This method greatly simplifies the variance of AltProts discovery by enriching small proteins smaller than 40 kDa. In a systematic comparison between 10 methods, the approach we reported enabled the discovery of more AltProts with overall higher intensities, with less cost of time and effort compared to other workflows. We applied this approach to identify 89 novel AltProts from mouse liver, 39 of which were differentially expressed between embryonic and adult mice. During embryonic development, the upregulated AltProts were mainly involved in biological pathways on RNA splicing and processing, whereas the AltProts involved in metabolisms were more active in adult livers. Our study not only provides an effective approach for identifying AltProts but also novel AltProts that are potentially important in developmental biology.     

Streamlining 'search and destroy': cost-effective surveillance for invasive species management

Invasive species surveillance has typically been targeted to where the species is most likely to occur. However, spatially varying environmental characteristics and land uses may affect more than just the probability of occurrence. Biodiversity or economic value, and the ease of detection and control are also likely to vary. We incorporate these factors into a detection and treatment model of a low-density invader to determine the surveillance strategy that minimizes expected management costs. Sites with a high probability of invader occurrence and great benefits associated with detection warrant intensive surveillance; however, the optimum investment is a nonlinear function of these factors. Environments where the invader is relatively easy to detect are prioritized for surveillance, although only a moderate investment is necessary to ensure a high probability of detection. Intensive surveillance effort may be allocated to other sites if the probability of occurrence, budget and/or expected benefits is sufficiently high.     

Wandering behaviour and pupariation in tsetse larvae

Abstract .Following parturition, the third instar larva of Glossina morsitans morsitans West begins a wandering period in which it crawls to the site of pupariation. The duration of wandering can be drastically shortened by pinching or by denying the larva physical contact with the substrate. Contact with water increases the wandering period. Duration of subsequent activities appears to be rigidly fixed. At the end of the wandering period, the larva quickly progresses through a stereotypic sequence of behaviours that include immobilization and excretion of a liquid from the anus, retraction of the anterior segments, cuticular shrinkage, and tanning. Muscular activity and mechanical changes in the cuticle are reflected in changes of haemocoelic pressure. Muscular contractions produce pressure pulses that gradually increase in frequency and intensity, reaching a peak during retraction of the anterior segments. Changes in the mechanical properties of the cuticle cause a more gradual elevation of baseline pressure as the cuticle shrinks and loses its plasticity. As tanning begins, muscular activity ceases and haemocoelic pressure gradually decreases. In spite of its unusual early development within the confines of the female's uterus, the free-living larva shows the full behavioural repertoire observed in other cyclor-rhaphous Diptera at pupariation.     

Data,Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing

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Highlights

• •In-depth proteomes of 4 SARS-CoV-2 cell line models (Vero E6, Calu-3, Caco-2, A549).
• •Proteomic evidence for thousands of Chlorocebus sabaeus proteins.
• •Proteomic response of Vero E6 cells to SARS-CoV-2 infection.
• •Synthetic peptides, spectral libraries, and targeted assays for SARS-CoV-2 proteins.

     

Why is biodiversity data-deficiency an ongoing conservation dilemma in Africa?

Recent reports illustrate deficiencies in knowledge about current conditions and long-term trends in population sizes of hundreds of African plants and animals’ species. In this commentary, I discuss the lack of standardized data for assessing and monitoring biodiversity in Africa. I present my own views on the causes for these knowledge and data gaps, their consequences for conservation, and future directions that could improve the current situation.There are many reasons for lack of standardized data including; ongoing conflicts and political instability in many biodiversity-rich countries; absence of regular and policy-driven monitoring programs; weak facilities; and irregular or insufficient funding. Existing biodiversity monitoring initiatives are often short-term, poorly-designed surveys, largely dependent on volunteer researchers or international partners, biased towards large “charismatic” animal species, and published in difficult-to-access outlets. Consequently, up-to-date and rigorous reports about conditions and trends of African biodiversity are limited, and conservation planning, comparative studies and accurate valuation of ecosystem services continue to be difficult.Urgent actions include: 1) commitments and support of local governments to implement effective conservation monitoring programs; 2) establishment of a network of carefully designed long-term and continent-wide monitoring initiatives for endangered species and biodiversity; and 3) involvement of universities, research centers, Non-Governmental Organizations (NGOs) and local communities in such monitoring efforts. Such actions could stimulate further in-depth studies and systematic analysis of the root causes and solutions for the decades-long African biodiversity knowledge gap. Examples of highly needed systematic analysis and documentation in the coming efforts towards filling up the biodiversity data gap in Africa should clearly define biodiversity data-deficiency by taxonomic groups and by countries.     

管网雨水补给河道用水的人工湿地水质净化流程研究

中国北方部分地区水资源短缺,河道干涸,但夏季雨水资源潜力丰富。虽径流受到一定污染,但较于生活污水和工业废水,其污染程度更低,成分更简单。雨水通过低运行成本的人工湿地净化系统,可以实现较好的净化效果,满足河道景观需求和生态补水。城市管网雨水承载能力过重的城市边缘区,建设更新过程中进行雨污分流制度,更适于采用人工水质净化的方式将城市雨水管网中的雨水进行就近消纳,减轻城市雨水管网压力,并利用表面负荷率（ALR）来确定并校核人工湿地面积。在综合现在人工水质净化主流程预处理单元、人工湿地单元和消毒存储单元3个环节的基础上,以低运营成本、低管理成本、最优净水量为指向,引入物联网技术智能管控系统,行程具有能控制各级出水水质监测、多级管控、净水生态功能与游览景观功能相结合等多重优点的人工水质净化全流程,达到符合河道水质标准的净化效果。该流程为缓解北方城镇河道缺水现状、解决城市雨洪问题提供新思路。     

高血压患者颈动脉粥样硬化与血脂、血压和血尿酸水平的相关性分析

目的:探讨高血压患者颈动脉粥样硬化(CAS)与血脂、血压以及血尿酸水平的相关性。方法:选择2017年2月至2018年8月在我院就诊的高血压患者117例作为研究组,另选择同期在我院进行体检的健康志愿者50例作为对照组。采用彩色多普勒超声诊断仪测定所有受试者的颈动脉内中膜厚度(IMT),并根据研究组患者的颈动脉IMT将其分为斑块组(IMT≥1.3 mm,33例)、IMT增厚组(1.0 mm≤IMT1.3 mm,49例)和IMT正常组(IMT1.0 mm,35例)。比较研究组与对照组受试者IMT,同时分别比较研究组与对照组受试者以及不同IMT高血压患者平均收缩压(SBP)、平均舒张压(DBP)、血清总胆固醇(TC)、甘油三酯(TG)、低密度脂蛋白胆固醇(LDL-C)、高密度脂蛋白胆固醇(HDL-C)以及尿酸水平,并采用Pearson相关性分析法分析高血压患者IMT与各指标的相关性。结果:与对照组比较,研究组IMT、SBP、DBP、TC、TG、LDL-C、血尿酸水平升高,HDL-C水平降低,差异均有统计学意义(P0.05)。斑块组患者SBP、DBP、TC、TG、LDL-C、血尿酸水平高于IMT增厚组和IMT正常组,HDL-C水平低于IMT增厚组和IMT正常组,差异均有统计学意义(P0.05);IMT增厚组患者SBP、DBP、TC、TG、LDL-C、血尿酸水平高于IMT正常组,HDL-C水平低于IMT正常组,差异均有统计学意义(P0.05)。Pearson相关性分析显示,高血压患者的IMT与SBP、DBP、TC、TG、LDL-C、血尿酸均呈正相关,与HDL-C呈负相关(P0.05)。结论:高血压患者IMT与血脂、血压和血尿酸水平均有明显相关性,血压、血脂、血尿酸参与了高血压患者CAS的发生与发展。     

无创正压通气联合纤维支气管镜肺泡灌洗对老年AECOPD合并Ⅱ型呼吸衰竭患者肺功能及血气指标的影响

目的:观察无创正压通气(NIPPV)联合纤维支气管镜(FB)肺泡灌洗对老年急性加重期慢性阻塞性肺疾病(AECOPD)合并Ⅱ型呼吸衰竭患者肺功能及血气指标的影响,为临床治疗方案的选择提供依据。方法:选取82例于2017年1月～2019年1月间在我院住院治疗的老年AECOPD合并II型呼吸衰竭患者。根据治疗方法将患者分为观察组(NIPPV联合FB肺泡灌洗治疗,n=42)与对照组(单独NIPPV治疗,n=40)。观察两组患者的住院时间及抗菌药静脉滴注时间,并比较治疗前及治疗后两组患者的血气指标[pH值(pH)、氧分压(PaO_2)、二氧化碳分压(PaCO_2)、血氧饱和度(SaO_2)]、肺功能指标[一秒钟用力呼气容积(FEV1)、肺活量(FVC)、呼气峰值流速(PEF)]的变化情况。记录两组患者治疗过程中的并发症发生情况。结果:观察组住院时间及抗菌药物静脉滴注时间均明显短于对照组(P0.05)。治疗后,两组pH、PaO_2、SaO_2明显上升,而PaCO_2明显下降(P0.05),且与对照组比较,观察组的pH、PaO_2、SaO_2明显较高,而PaCO_2明显较低(P0.05)。治疗后,对照组FEV1、FVC、PEF无明显变化(P0.05),观察组FEV1、FVC、PEF均明显升高且高于对照组(P0.05)。两组患者不良反应发生率比较差异无统计学意义(P0.05)。结论:NIPPV联合FB肺泡灌洗治疗对老年AECOPD合并II型呼吸衰竭患者血气指标及肺功能均有较好的改善效果,能明显缩短患者的住院时间及抗菌药静脉滴注时间,且安全性良好。